The Quantitative Ecosystem Dynamics Lab

UC Berkeley: Dept. of Environmental Science, Policy and Management

Berkeley National Lab: Climate and Ecosystem Sciences Division


Large changes in the amount and extent of global vegetation have been observed over recent decades. Both increases and decreases have been reported, but understanding the reasons for the observed changes is challenging. For example, a warming atmosphere can extend the growing season, generally enhancing ecosystem production, but can also lead to drier soils in summer, generally an impediment to growth. Similarly, elevated CO2 can enhance photosynthesis, but this does not always translate to increased production. Understanding how the multiple ongoing environmental changes combine to shape landscapes around the world remains a grand challenge, particularly in the face of the large changes in climate and the atmosphere expected in the coming decades. Our group develops innovative methods to combine field observations and remote sensing data with models of ecosystem function to understand why and how ecosystems are changing, and to better inform projections under future climate change scenarios.

Example Publications

- Keenan TF, Riley WJ. (2018) Greening of the land surface in the world’s cold regions consistent with recent warming. Nature Climate Change, 8: 825–829.
- Hufkens K, Keenan TF, et al. (2016) Productivity of North American grasslands is increased under future climate scenarios despite rising aridity. Nature Climate Change, 6: 710–714.
- Keenan TF, Gray J, et al. (2014) Net carbon uptake has increased through warming-induced changes in temperate forest phenology. Nature Climate Change, 4: 598–604.

Carbon is the basic building block of biology, and by trapping radiation it also plays an important role in maintaining the Earth’s atmosphere at a temperature hospitable to life. It is continuously exchanged between ecosystems and the environment through a complex combination of physics and biology. In recent decades, these exchanges have led to an increased accumulation of carbon on the land surface: the terrestrial carbon sink. The sink constitutes a valuable ecosystem service, removing about 35% of total anthropogenic emissions from industrial activity and land-use change, and thus significantly slowing the rate of climate change. We use observations of atmospheric CO2, anthropogenic emissions, and models of the global carbon cycle to study the fundamental biological processes that govern the terrestrial carbon cycle, their dependence on climate, atmospheric composition, and human interventions, and the resulting implications for the accumulation of CO2 in the atmosphere.

Example Publications

- Keenan TF, Williams CA. (2018) The Terrestrial Carbon Sink. Annual Review of Environment and Resources, 43: 219–243.
- Keenan TF, Prentice IC, Canadell JG, Williams CA, Wang H, Raupach M, Collatz GJ. (2016) Recent pause in the growth rate of atmospheric CO2 due to enhanced terrestrial carbon uptake. Nature Communications, 7: 13428.
- Luo Y, Keenan TF, Smith M. (2015) Predictability of the terrestrial carbon cycle. Global Change Biology, 21: 1737-1751.

Ecosystem scientists and micrometeorologists have established vast networks of sensors around the globe to gather observations of ecosystem function. For example, AmeriFlux is a well-established regional network that has grown to encompass over 300 sites across the Americas. The sites continuously measure the exchange of trace gases such as carbon dioxide and methane, at a frequency of 10 times a second, along with meteorological observations such as temperature, humidity, wind speed, and rainfall. These measurements, based on a technique called eddy-covariance, are essential for understanding ecosystem function, and how ecosystem functional changes translate to changes in the atmosphere. We use observations gathered using the eddy-covariance technique by scientists at over a thousand measurement sites worldwide. Our group is involved in both the management of AmeriFlux, through the AmeriFlux Management Project at Berkeley Lab., and in the coordination of FLUXNET, the global network of regional eddy-covariance networks. Combination flux observations with satellite data and ecosystem models, we synthesize across the global networks to better understand changes in key ecosystem functions, such as the efficiency with which ecosystems use water, and the response of photosynthesis and respiration to environmental change.

Example Publications

- Luo X & Keenan TF (2020) Global evidence for the acclimation of ecosystem photosynthesis to light. Nature Ecology and Evolution, 4: 1351–1357.
- Keenan TF et al. (2019) Widespread inhibition of daytime ecosystem respiration. Nature Ecology and Evolution, 3: 407–415.
- Keenan TF, Hollinger DY, Bohrer G, Dragoni D, Munger JW, Schmid HP, Richardson AD. (2013) Increase in forest water-use efficiency as atmospheric carbon dioxide concentrations rise. Nature, 499: 324–327.

Structural, chemical and physiological traits are key characteristics of plant function, and form part of a coupled whole plant economic spectrum that encapsulates evolutionary histories, competitive strategies and acclimation to resource constraints. The spectrum describes the return on investments of nutrients and carbon, and as such plays an important role in our understanding of whole ecosystem structure, function and potential responses to climate change. Our work uses observations from global databases of leaf traits to improve global models of ecosystem function and distribution, moving from the strict characterization of vegetation in plant functional types to a more continuous plant trait field approach. To do so, we are building theory from first-principles, based on understanding of ecosystem physiology.

Example Publications

- Smith N, Keenan TF, et al. (2019) Global photosynthetic capacity is optimized to the environment. Ecology Letters, 22: 506-517
- Keenan TF, Niinemets Ü. (2016) Global leaf trait estimates biased due to plasticity in the shade. Nature Plants, 3: 16201.
- Niinemets Ü, Keenan TF, Hallik L. (2015) A worldwide analysis of within-canopy variations in leaf structural, chemical and physiological traits across plant functional types. New Phytologist, 205: 973–993.